Test ID TBNGS Mycobacterium tuberculosis Complex, Molecular Detection of Drug Resistance Markers, Whole Genome Sequencing, Varies

Additional Testing Requirements
If traditional broth-based phenotypic drug resistance testing is desired, add TB1LN / Antimicrobial Susceptibility, Mycobacterium tuberculosis Complex, First Line, Varies; TB2LN / Susceptibility, Mycobacterium tuberculosis Complex, Second Line, Varies; and TBPZA / Susceptibility, Mycobacterium tuberculosis Complex, Pyrazinamide, Varies.
Shipping Instructions
See Infectious Specimen Shipping Guidelines in Special Instructions
Necessary Information
1. Specimen source is required.
2. Organism identification is required; if not provided then organism identification will be reflexed to CTBID / Culture Referred for Identification, Mycobacterium and Nocardia, Varies with additional charges.
3. Method of identification is required (eg, nucleic acid hybridization probes, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry [MALDI-TOF MS], DNA sequencing, line probe assay).
Specimen Required
Supplies: Infectious Container, Large (T146)
Specimen Type: Mycobacterium tuberculosis complex isolate growing in pure culture. Isolates older than 5 weeks or not in a pure culture may require subculture for fresh, isolated growth so the turnaround time for results may be delayed.
Container/Tube: Middlebrook (7H10 or 7H11) medium slant; growth in broth medium (eg, Mycobacteria Growth Indicator Tube [7H9] broth) or on a Lowenstein-Jensen medium slant can be sent but turnaround time for results may be delayed because subculture to Middlebrook agar medium may be required. Organisms received in mixture may result in additional charges for isolation and identification.
Specimen Volume: Isolate with visible growth on solid media; if broth is sent, 3 mL or more of broth culture required.
Collection Instructions:
1. Organism must be in pure culture, actively growing. Do not submit mixed cultures.
2. Place specimen in a large infectious container and label as an etiologic agent/infectious substance.
Useful For
Molecular detection of drug resistance variants in culture isolates of the Mycobacterium tuberculosis complex
May provide a more rapid detection of drug resistance than phenotypic, broth-based testing
Aiding in the resolution of discrepant results obtained using phenotypic methods testing for M tuberculosis isolates that are not sufficiently viable to allow for culture-based testing
Testing Algorithm
Whole genome sequencing (WGS) of Mycobacterium tuberculosis complex isolates is performed followed by evaluation of selected genes of interest for the presence of well-characterized, drug resistance-conferring variants.
Traditional broth-based, phenotypic drug resistance testing should also be performed, since not all genes associated with resistance within the M tuberculosis complex genome have been fully elucidated or are evaluated in this test. If traditional broth-based phenotypic drug resistance testing is desired, add TB1LN / Antimicrobial Susceptibility, Mycobacterium tuberculosis Complex, First Line, Varies; TB2LN / Susceptibility, Mycobacterium tuberculosis Complex, Second Line, Varies; and TBPZA / Susceptibility, Mycobacterium tuberculosis Complex, Pyrazinamide, Varies.
Special Instructions
Method Name
Whole Genome Sequencing
Reporting Name
Susceptibility, Mtb Complex, NGSSpecimen Type
VariesSpecimen Stability Information
Specimen Type | Temperature | Time | Special Container |
---|---|---|---|
Varies | Ambient (preferred) | ||
Refrigerated |
Day(s) Performed
Tuesday, Thursday
Report Available
7 to 14 daysPerforming Laboratory

Test Classification
This test was developed, and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. This test has not been cleared or approved by the US Food and Drug Administration.CPT Code Information
81479
LOINC Code Information
Test ID | Test Order Name | Order LOINC Value |
---|---|---|
TBNGS | Susceptibility, Mtb Complex, NGS | 94053-6 |
Result ID | Test Result Name | Result LOINC Value |
---|---|---|
TBOR | Organism Identification | 9825-1 |
TBIS | Culture isolate grown from specimen source | 31208-2 |
602791 | rpoB | 94065-0 |
603383 | rpoB Interpretation | 89489-9 |
603384 | katG | 94054-4 |
603385 | katG Interpretation | 89488-1 |
603386 | inhA | 94055-1 |
603387 | inhA Interpretation | 89488-1 |
603388 | fabG1 | 94056-9 |
603389 | fabG1 Interpretation | 89488-1 |
603390 | ahpC | 94057-7 |
603391 | ahpC Interpretation | 89488-1 |
603392 | embB | 94058-5 |
603393 | embB Interpretation | 89491-5 |
603394 | pncA | 94059-3 |
603395 | pncA Interpretation | 92242-7 |
603396 | gyrA | 94060-1 |
603397 | gyrA Interpretation | 89487-3 |
603398 | gidB | 94061-9 |
603399 | gidB Interpretation | 89490-7 |
603400 | rrs | 94062-7 |
603401 | rrs Interpretation | 89490-7 |
603402 | rpsL | 94063-5 |
603403 | rpsL Interpretation | 89490-7 |
603404 | eis | 94064-3 |
603405 | eis Interpretation | 89490-7 |
603535 | Method | 85069-3 |
Reference Values
Results are reported as variant detected or no variant detected.
Forms
If not ordering electronically, complete, print, and send a Microbiology Test Request (T244) with the specimen.